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2 Data Science guidance sessions | R/Bioconductor-powered Team Data Science

L. Collado-Torres

Seminario III: R/Bioconductor. Ago-Dic 2009

2023-10-03-FOGBoston - Speaker Deck

Transcriptomic Insight Into the Polygenic Mechanisms Underlying Psychiatric Disorders - Biological Psychiatry

Please explain what a gene isoform is in lay terms? - Biology Stack Exchange

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GENCODE - The Human GENCODE Release History

L. Collado Torres: PDCB-HTS

Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex | bioRxiv

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Differential expression analysis of RNA-seq data at single-base resolution | Biostatistics | Oxford Academic

Developmental regulation of human cortex transcription and its clinical relevance at single base resolution | Nature Neuroscience

LieberInstitute/SPEAQeasy: SPEAQeasy: portable LIBD RNA-seq pipeline using Nextflow. Check http://research.libd.org/SPEAQeasy-example/ for an example on how to use this pipeline and analyze the resulting output files.

7 Pipeline Outputs | SPEAQeasy

StringTie

CHESS

CHESS 3: an improved, comprehensive catalog of human genes and transcripts based on large-scale expression data, phylogenetic analysis, and protein structure | Genome Biology

10x genomics stock - Google Search

illumina stock price - Google Search

China bans imports of Illumina's gene sequencers right after Trump tariff action | Reuters

How it Works | Chromium Single Cell Gene Expression Solution - YouTube

HumanPilot: first spatially-resolved transcriptomics study using Visium | L. Collado-Torres

Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex | Nature Neuroscience

A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex | Science

Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data | Science Advances

Bioconductor - Home

2025 LIBD lcolladotor data science team TL;DR - Speaker Deck

[2025-01-29] R/Bioconductor-powered Team Data Science: TLDR version 2025 - YouTube

2025 LIBD lcolladotor data science team TL;DR - Speaker Deck

recount3: summaries and queries for large-scale RNA-seq expression and splicing | Genome Biology | Full Text

CDSB

CDSB2021-scRNAseq - YouTube

LIBD rstats club

LIBD rstats club schedule - Google Sheets